modules/nanoplot

Run NanoPlot on nanopore-sequenced reads

quality controlqcfastqsequencing summarynanopore

https://github.com/nf-core/modules/[...]/modules/nf-core/nanoplot

Description

Run NanoPlot on nanopore-sequenced reads

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`ontfile`
`:file`

ONT file

Output

name:type

description

pattern

`html`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.html`
`:file`

NanoPlot report

*{.html}

`png`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.png`
`:file`

Plots generated by NanoPlot

*{.png}

`txt`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.txt`
`:file`

Stats from NanoPlot

*{.txt}

`versions_nanoplot`

`${task.process}`
`:string`

The name of the process

`NanoPlot`
`:string`

The name of the tool

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`NanoPlot`
`:string`

The name of the tool

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

The expression to obtain the version of the tool

Tools

nanoplot
GPL-3.0-or-later

NanoPlot is a tool for plotting long-read sequencing data and alignment.

http://nanoplot.bioinf.be github.com/wdecoster/NanoPlot

modules/nanoplot

Description

Input

`meta`
`:map`

`ontfile`
`:file`

Output

`html`

`meta`
`:map`

`*.html`
`:file`

`png`

`meta`
`:map`

`*.png`
`:file`

`txt`

`meta`
`:map`

`*.txt`
`:file`

`versions_nanoplot`

`${task.process}`
`:string`

`NanoPlot`
`:string`

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`NanoPlot`
`:string`

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

Tools

nanoplot
GPL-3.0-or-later

included in

maintainers

get in touch

modules/nanoplot

Description

Input

meta:map

ontfile:file

Output

html

meta:map

*.html:file

png

meta:map

*.png:file

txt

meta:map

*.txt:file

versions_nanoplot

${task.process}:string

NanoPlot:string

NanoPlot --version | sed 's/^.*NanoPlot //; s/ .*\$//':eval

Topics

versions

${task.process}:string

NanoPlot:string

NanoPlot --version | sed 's/^.*NanoPlot //; s/ .*\$//':eval

Tools

nanoplot GPL-3.0-or-later

included in

maintainers

get in touch

`meta`
`:map`

`ontfile`
`:file`

`html`

`meta`
`:map`

`*.html`
`:file`

`png`

`meta`
`:map`

`*.png`
`:file`

`txt`

`meta`
`:map`

`*.txt`
`:file`

`versions_nanoplot`

`${task.process}`
`:string`

`NanoPlot`
`:string`

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

`versions`

`${task.process}`
`:string`

`NanoPlot`
`:string`

`NanoPlot --version | sed 's/^.NanoPlot //; s/ .\$//'`
`:eval`

nanoplot
GPL-3.0-or-later